Abstract
Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.
Translated title of the contribution | El conjunto de datos del consorcio Global Soil Mycobiome para impulsar la investigación sobre la diversidad de hongos |
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Original language | English (US) |
Pages (from-to) | 573-588 |
Number of pages | 16 |
Journal | Fungal Diversity |
Volume | 111 |
Issue number | 1 |
DOIs | |
State | Published - Nov 2021 |
All Science Journal Classification (ASJC) codes
- Ecology, Evolution, Behavior and Systematics
- Ecology
Author Keywords
- Concept
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The Global Soil Mycobiome consortium dataset for boosting fungal diversity research. / Tedersoo, Leho; Mikryukov, Vladimir; Anslan, Sten; Bahram, Mohammad; Khalid, Abdul Nasir; Corrales, Adriana; Agan, Ahto; Vasco-Palacios, Aída M.; Saitta, Alessandro; Antonelli, Alexandre; Rinaldi, Andrea C.; Verbeken, Annemieke; Sulistyo, Bobby P.; Tamgnoue, Boris; Furneaux, Brendan; Ritter, Camila Duarte; Nyamukondiwa, Casper; Sharp, Cathy; Marín, César; Dai, D. Q.; Gohar, Daniyal; Sharmah, Dipon; Biersma, Elisabeth Machteld; Cameron, Erin K.; De Crop, Eske; Otsing, Eveli; Davydov, Evgeny A.; Albornoz, Felipe E.; Brearley, Francis Q.; Buegger, Franz; Gates, Genevieve; Zahn, Geoffrey; Bonito, Gregory; Hiiesalu, Indrek; Hiiesalu, Inga; Zettur, Irma; Barrio, Isabel C.; Pärn, Jaan; Heilmann-Clausen, Jacob; Ankuda, Jelena; Kupagme, John Y.; Sarapuu, Joosep; Maciá-Vicente, Jose G.; Fovo, Joseph Djeugap; Geml, József; Alatalo, Juha M.; Alvarez-Manjarrez, Julieta; Monkai, Jutamart; Põldmaa, Kadri; Runnel, Kadri; Adamson, Kalev; Bråthen, Kari A.; Pritsch, Karin; Tchan, Kassim I.; Armolaitis, Kęstutis; Hyde, Kevin D.; Newsham, Kevin K.; Panksep, Kristel; Adebola, Lateef A.; Lamit, Louis J.; Saba, Malka; da Silva Cáceres, Marcela E.; Tuomi, Maria; Gryzenhout, Marieka; Bauters, Marijn; Bálint, Miklós; Wijayawardene, Nalin; Hagh-Doust, Niloufar; Yorou, Nourou S.; Kurina, Olavi; Mortimer, Peter E.; Meidl, Peter; Nilsson, R. Henrik; Puusepp, Rasmus; Casique-Valdés, Rebeca; Drenkhan, Rein; Garibay-Orijel, Roberto; Godoy, Roberto; Alfarraj, Saleh; Rahimlou, Saleh; Põlme, Sergei; Dudov, Sergey V.; Mundra, Sunil; Ahmed, Talaat; Netherway, Tarquin; Henkel, Terry W.; Roslin, Tomas; Fedosov, Vladimir E.; Onipchenko, Vladimir G.; Yasanthika, W. A.Erandi; Lim, Young Woon; Piepenbring, Meike; Klavina, Darta; Kõljalg, Urmas; Abarenkov, Kessy.
In: Fungal Diversity, Vol. 111, No. 1, 11.2021, p. 573-588.Research output: Contribution to journal › Article › peer-review
TY - JOUR
T1 - The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
AU - Tedersoo, Leho
AU - Mikryukov, Vladimir
AU - Anslan, Sten
AU - Bahram, Mohammad
AU - Khalid, Abdul Nasir
AU - Corrales, Adriana
AU - Agan, Ahto
AU - Vasco-Palacios, Aída M.
AU - Saitta, Alessandro
AU - Antonelli, Alexandre
AU - Rinaldi, Andrea C.
AU - Verbeken, Annemieke
AU - Sulistyo, Bobby P.
AU - Tamgnoue, Boris
AU - Furneaux, Brendan
AU - Ritter, Camila Duarte
AU - Nyamukondiwa, Casper
AU - Sharp, Cathy
AU - Marín, César
AU - Dai, D. Q.
AU - Gohar, Daniyal
AU - Sharmah, Dipon
AU - Biersma, Elisabeth Machteld
AU - Cameron, Erin K.
AU - De Crop, Eske
AU - Otsing, Eveli
AU - Davydov, Evgeny A.
AU - Albornoz, Felipe E.
AU - Brearley, Francis Q.
AU - Buegger, Franz
AU - Gates, Genevieve
AU - Zahn, Geoffrey
AU - Bonito, Gregory
AU - Hiiesalu, Indrek
AU - Hiiesalu, Inga
AU - Zettur, Irma
AU - Barrio, Isabel C.
AU - Pärn, Jaan
AU - Heilmann-Clausen, Jacob
AU - Ankuda, Jelena
AU - Kupagme, John Y.
AU - Sarapuu, Joosep
AU - Maciá-Vicente, Jose G.
AU - Fovo, Joseph Djeugap
AU - Geml, József
AU - Alatalo, Juha M.
AU - Alvarez-Manjarrez, Julieta
AU - Monkai, Jutamart
AU - Põldmaa, Kadri
AU - Runnel, Kadri
AU - Adamson, Kalev
AU - Bråthen, Kari A.
AU - Pritsch, Karin
AU - Tchan, Kassim I.
AU - Armolaitis, Kęstutis
AU - Hyde, Kevin D.
AU - Newsham, Kevin K.
AU - Panksep, Kristel
AU - Adebola, Lateef A.
AU - Lamit, Louis J.
AU - Saba, Malka
AU - da Silva Cáceres, Marcela E.
AU - Tuomi, Maria
AU - Gryzenhout, Marieka
AU - Bauters, Marijn
AU - Bálint, Miklós
AU - Wijayawardene, Nalin
AU - Hagh-Doust, Niloufar
AU - Yorou, Nourou S.
AU - Kurina, Olavi
AU - Mortimer, Peter E.
AU - Meidl, Peter
AU - Nilsson, R. Henrik
AU - Puusepp, Rasmus
AU - Casique-Valdés, Rebeca
AU - Drenkhan, Rein
AU - Garibay-Orijel, Roberto
AU - Godoy, Roberto
AU - Alfarraj, Saleh
AU - Rahimlou, Saleh
AU - Põlme, Sergei
AU - Dudov, Sergey V.
AU - Mundra, Sunil
AU - Ahmed, Talaat
AU - Netherway, Tarquin
AU - Henkel, Terry W.
AU - Roslin, Tomas
AU - Fedosov, Vladimir E.
AU - Onipchenko, Vladimir G.
AU - Yasanthika, W. A.Erandi
AU - Lim, Young Woon
AU - Piepenbring, Meike
AU - Klavina, Darta
AU - Kõljalg, Urmas
AU - Abarenkov, Kessy
N1 - Publisher Copyright: © 2021, MUSHROOM RESEARCH FOUNDATION.
PY - 2021/11
Y1 - 2021/11
N2 - Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.
AB - Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.
UR - http://www.scopus.com/inward/record.url?scp=85120358779&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85120358779&partnerID=8YFLogxK
U2 - 10.1007/s13225-021-00493-7
DO - 10.1007/s13225-021-00493-7
M3 - Article
AN - SCOPUS:85120358779
VL - 111
SP - 573
EP - 588
JO - Fungal Diversity
JF - Fungal Diversity
SN - 1560-2745
IS - 1
ER -