The complex task of choosing a de novo assembly: Lessons from fungal genomes

Keyphrases

• K-mer 100%
• De-novo Assembly 100%
• Fungal Genome 100%
• Assembly Programs 80%
• Gene Space 40%
• Fungi 20%
• Next-generation Sequencing 20%
• Genome Assembly 20%
• Fungal Strains 20%
• Eukaryotes 20%
• Whole Genome Sequencing 20%
• Method Validation 20%
• Protein-coding Genes 20%
• Metazoan 20%
• Selection Criteria 20%
• Paracoccidioides Brasiliensis 20%
• Sequence Reads 20%
• Parameter Values 20%
• Molecular Microbiology 20%
• Space Elements 20%
• De Bruijn Graph 20%
• Assembler 20%
• Word Size 20%
• Intergenic DNA 20%
• Illumina Paired-end Sequencing 20%
• Complex Decision-making 20%
• Illumina Reads 20%
• Read Sets 20%
• Prokaryotes 20%
• Assembly Process 20%
• SOAPdenovo2 20%
• Repetitive Elements 20%
• Read Length 20%
• Assembly Selection 20%
• Microbiology Laboratory 20%

Biochemistry, Genetics and Molecular Biology

• Genomics 100%
• Fungal Genome 100%
• Next Generation Sequencing 50%
• Decision Making 50%
• Intergenic Region 50%
• Paracoccidioides brasiliensis 50%
• Eukaryote 50%
• Fungal Strain 50%
• Spacer DNA 50%
• Prokaryote 50%

Agricultural and Biological Sciences

• Decision Making 100%
• Selection Criterion 100%
• Paracoccidioides brasiliensis 100%
• Intergenic Region 100%