TY - JOUR
T1 - Standard deviations and correlations of GC levels in DNA sequences
AU - Clay, Oliver
N1 - Copyright:
Copyright 2007 Elsevier B.V., All rights reserved.
PY - 2001/10/3
Y1 - 2001/10/3
N2 - In a DNA sequence that exhibits long-range correlations, standard deviations among the GC levels of its segments can be up to an order of magnitude higher than in a sequence consisting of independent, identically distributed nucleotides. Conversely, plots of inter-segment standard deviations vs. segment length reveal quantitative information about the correlations present in a sequence. We present and discuss formulae that relate long-range (power-law) correlations between the nucleotides of a sequence to the expected standard deviations of the GC levels of its segments, and to the correlations between them.
AB - In a DNA sequence that exhibits long-range correlations, standard deviations among the GC levels of its segments can be up to an order of magnitude higher than in a sequence consisting of independent, identically distributed nucleotides. Conversely, plots of inter-segment standard deviations vs. segment length reveal quantitative information about the correlations present in a sequence. We present and discuss formulae that relate long-range (power-law) correlations between the nucleotides of a sequence to the expected standard deviations of the GC levels of its segments, and to the correlations between them.
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U2 - 10.1016/S0378-1119(01)00666-7
DO - 10.1016/S0378-1119(01)00666-7
M3 - Research Article
C2 - 11591469
AN - SCOPUS:0035802425
SN - 0378-1119
VL - 276
SP - 33
EP - 38
JO - Gene
JF - Gene
IS - 1-2
ER -