Original language | English (US) |
---|---|
Pages (from-to) | 339-345 |
Number of pages | 7 |
Journal | Systematic Biology |
Volume | 62 |
Issue number | 2 |
DOIs | |
State | Published - 2013 |
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In: Systematic Biology, Vol. 62, No. 2, 2013, p. 339-345.
Research output: Contribution to journal › Research Article › peer-review
TY - JOUR
T1 - A comment on the use of stochastic character maps to estimate evolutionary rate variation in a continuously valued trait
AU - Revell, L.J.
N1 - Cited By :9 Export Date: 17 April 2018 Correspondence Address: Revell, L.J.; Department of Biology, University of Massachusetts Boston, Boston, MA 02125, United States; email: [email protected] References: Alfaro, M.E., Santini, F., Brock, C., Alamillo, H., Dornburg, A., Rabosky, D.L., Carnevale, G., Harmon, L.J., Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates (2009) Proc. Natl. Acad. Sci. USA, 106, pp. 13410-13414; Algar, A.C., Losos, J.B., Evolutionary assembly of island faunas reverses the classic island-mainland richness difference in Anolis lizards (2011) J. Biogeogr, 38, pp. 1125-1137; Anacker, B.L., Whittall, J.B., Goldberg, E.E., Harrison, S.P., Origins and consequences of serpentine endemism in the California flora (2011) Evolution, 65, pp. 365-376; Beaulieu, J.M., Jhwueng, D.-C., Boettiger, C., O'Meara, B.C., Modeling stabilizing selection: Expanding the Ornstein-Uhlenbeck model of adaptive evolution (2012) Evolution, 66, pp. 2369-2383; Bokma, F., Detection of punctuated equilibrium by Bayesian estimation of speciation and extinction rates, ancestral character states, and rates of anagenetic and cladogenetic evolution on a molecular phylogeny (2008) Evolution, 62, pp. 2718-2726; Bollback, J.P., SIMMAP: Stochastic character mapping of discrete traits on phylogenies (2006) BMC Bioinformatics, 7, p. 88; Brockington, S.F., Walker, R.H., Glover, B.J., Soltis, P.S., Soltis, D.E., Complex pigment evolution in the Caryophyllales (2011) New Phytol, 190, pp. 854-864; Butler, M.A., King, A.A., Phylogenetic comparative analysis: A modeling approach for adaptive evolution (2004) Am. Nat, 164, pp. 683-695; Calvente, A., Zappi, D.C., Forest, F., Lohmann, L.G., Molecular phylogeny of the tribe Rhipsalideae (Cactaceae) and taxonomic implications for Schlumbergera and Hatiora (2011) Mol. Phylogenet. Evol, 58, pp. 456-468; Cavalli-Sforza, L.L., Edwards, A.W.F., Phylogenetic analysis: Models and estimation procedures (1967) Evolution, 21, pp. 550-570; Collar, D.C., O'Meara, B.C., Wainwright, P.C., Near, T.J., Piscivory limits diversification of feeding morphology in centrarchid fishes (2009) Evolution, 63, pp. 1557-1573; Collar, D.C., Schulte, I.I.J.A., O'Meara, B.C., Losos, J.B., Habitat use affects morphological diversification in dragon lizards (2010) J. Evol. Biol, 23, pp. 1033-1049; Eastman, J.M., Alfaro, M.E., Joyce, P., Hipp, A.L., Harmon, L.J., A novel comparative method for identifying shifts in the rate of character evolution on trees (2011) Evolution, 65, pp. 3578-3589; Felsenstein, J., Maximum likelihood estimation of evolutionary trees from continuous characters (1973) Am. J. Hum. Genet, 25, pp. 471-492; Felsenstein, J., Phylogenies and the comparativemethod (1985) Am.Nat, 125, pp. 1-15; Harmon, L.J., Weir, J.T., Brock, C.D., Glor, R.E., GEIGER: Investigating evolutionary radiations (2008) Bioinformatics, 24, pp. 129-131; Huelsenbeck, J.P., Nielsen, R., Bollback, J.P., Stochastic mapping of morphological characters (2003) Syst. Biol, 52, pp. 131-158; Lynch, M., Walsh, B., (1998) Genetics and Analysis of Quantitative Traits, , Sunderland (MA): Sinauer; Mahler, D.L., Revell, L.J., Glor, R.E., Losos, J.B., Ecological opportunity and the rate of morphological evolution in the diversification of Greater Antillean anoles (2010) Evolution, 64, pp. 2731-2745; Martin, C.H., Wainwright, P.C., Trophic novelty is linked to exceptional rates of morphological diversification in two adaptive radiations of Cyprinidon pupfish (2011) Evolution, 65, pp. 2197-2212; Mooers, A., Gascuel, O., Stadler, T., Li, H., Steel, M., Branch lengths on birth-death trees and the expected loss of phylogenetic diversity (2012) Syst. Biol, 61, pp. 195-203; Nielsen, R., Mapping mutations on phylogenies (2002) Syst. Biol, 51, pp. 729-739; O'Meara, B.C., Ané, C., Sanderson, M.J., Wainwright, P.C., Testing for different rates of continuous trait evolution using likelihood (2006) Evolution, 60, pp. 922-933; Paradis, E., (2012) Analysis of Phylogenetics and Evolution with R. 2nd Ed, , New York Springer; Paradis, E., Claude, J., Strimmer, K., APE: Analyses of phylogenetics and evolution in R language (2004) Bioinformatics, 20, pp. 289-290; Price, S.A., Holzman, R., Near, T.J., Wainwright, P.C., Coral reefs promote the evolution of morphological diversity and ecological novelty in labrid fishes (2011) Ecol. Lett, 14, pp. 462-469; (2011) R: A Language and Environment for Statistical Computing., , R Development Core Team Vienna (Austria): R Foundation for Statistical Computing; Rabosky, D.L., Likelihood methods for detecting temporal shifts in diversification rates (2006) Evolution, 60, pp. 1152-1164; Revell, L.J., Phytools: An R package for phylogenetic comparative biology (and other things) (2012) Methods Ecol. Evol, 3, pp. 217-223; Revell, L.J., Collar, D.C., Phylogenetic analysis of the evolutionary correlation using likelihood (2009) Evolution, 63, pp. 1090-1100; Revell, L.J., Mahler, D.L., Peres-Neto, P.R., Redelings, B.D., A new phylogenetic method for identifying exceptional phenotypic diversification (2012) Evolution, 66, pp. 135-146; Slater, G.J., Harmon, L.J., Wegmann, D., Joyce, P., Revell, L.J., Alfaro, M.E., Fitting models of continuous trait evolution to incompletely sampled comparative data using Approximate Bayesian Computation (2012) Evolution, 66, pp. 752-762; Stadler, T., Mammalian phylogeny reveals recent diversification rate shifts (2011) Proc. Natl. Acad. Sci. USA, 108, pp. 6187-6192; Thomas, G.H., Freckleton, R.P., Székely, T., Comparative analyses of the influence of developmental mode on phenotypic diversification rates in shorebirds (2006) Proc. R. Soc. B Biol. Sci, 273, pp. 1619-1624; Van Wilgenburg, E., Symonds, M.R.E., Elgar, M.A., Evolution of cuticular hydrocarbon diversity in ants (2011) J. Evol. Biol, 24, pp. 1188-1198
PY - 2013
Y1 - 2013
U2 - 10.1093/sysbio/sys084
DO - 10.1093/sysbio/sys084
M3 - Research Article
SN - 1063-5157
VL - 62
SP - 339
EP - 345
JO - Systematic Biology
JF - Systematic Biology
IS - 2
ER -