Research output per year
Research output per year
- 1 - 50 out of 53 results
Search results
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2023
P155 Gallstone aetiologies and bacteria: a multi-site microbiome study of 51 Colombian patients
Dingsdag, S. A., Clay, O. K. & Quintero, G. A., Jun 2023.Research output: Contribution to conference › Poster › peer-review
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The structure of associations: Method insights from analyzing 28 clinical isolates of Cryptococcus neoformans
Vélez, N., Vega-Vela, N., Clay, O. K. & Parra-Giraldo, C-M., Mar 2 2023, In: Medical Mycology. 61, 3Research output: Contribution to journal › Research Article › peer-review
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2022
Contexto genético de la hipertensión arterial
Translated title of the contribution :Genetic context of arterial hypertension. Research output: Chapter in Book/Inform › Chapter › Research
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2018
Application of real-time PCR assays for the diagnosis of histoplasmosis using three molecular targets in human FFPE tissues and whole-blood
López, L. F., Clay, O. K., Cáceres, D. H. & Gómez, B. L., Jun 5 2018, p. S1-S159. 1 p.Research output: Contribution to conference › Abstract › peer-review
Open Access -
Draft Genome Sequences of Two Sporothrix schenckii Clinical Isolates Associated with Human Sporotrichosis in Colombia
Gomez, O. M., Alvarez, L. C., Muñoz, J. F., Misas, E., Gallo, J. E., Jimenez, M. D. P., Arango, M., McEwen, J. G., Hernandez, O. & Clay, O. K., Jun 1 2018, In: Genome Announcements. 6, 24, e00495-18.Research output: Contribution to journal › Research Article › peer-review
9 Scopus citations -
Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi
Muñoz, J. F., McEwen, J. G., Clay, O. K. & Cuomo, C. A., Dec 1 2018, In: Scientific Reports. 8, 1, 4473.Research output: Contribution to journal › Research Article › peer-review
24 Scopus citations -
2017
Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales)
Dukik, K., Muñoz, J. F., Jiang, Y., Feng, P., Sigler, L., Stielow, J. B., Freeke, J., Jamalian, A., Gerrits van den Ende, B., McEwen Ochoa, J. G., Clay, O. K., Schwartz, I. S., Govender, N. P., Maphanga, T. G., Cuomo, C. A., Moreno, L. F., Kenyon, C., Borman, A. M. & de Hoog, S., May 1 2017, In: Mycoses. 60, 5, p. 296-309 14 p.Research output: Contribution to journal › Research Article › peer-review
116 Scopus citations -
Standardization and validation of real time PCR assays for the diagnosis of histoplasmosis using three molecular targets in an animal model
López, L. F., Muñoz, C. O., Cáceres, D. H., Tobón, Á. M., Loparev, V., Clay, O., Chiller, T., Litvintseva, A., Gade, L., González, Á. & Gómez, B. L., Dec 29 2017, In: PLOS ONE. 12, 12, p. 1-15 15 p., e0190311.Research output: Contribution to journal › Research Article › peer-review
Open Access18 Scopus citations -
Toward Multiple SNP Motif Analyses of Loci Associated With Phenotypic Traits
Gallo, J. E., Misas, E., McEwen, J. G. & Clay, O. K., Sep 19 2017, In: Journal of the American College of Cardiology. 70, 12, p. 1539-1540 2 p.Research output: Contribution to journal › Letter › peer-review
Open Access1 Scopus citations -
2016
From NGS assembly challenges to instability of fungal mitochondrial genomes: A case study in genome complexity
Misas, E., Muñoz, J. F., Gallo, J. E., McEwen, J. G. & Clay, O. K., Apr 1 2016, In: Computational Biology and Chemistry. 61, p. 258-269 12 p.Research output: Contribution to journal › Research Article › peer-review
4 Scopus citations -
Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides
Muñoz, J. F., Farrer, R. A., Desjardins, C. A., Gallo, J. E., Sykes, S., Sakthikumar, S., Misas, E., Whiston, E. A., Bagagli, E., Soares, C. M. A., Teixeira, M. D. M., Taylor, J. W., Clay, O. K., McEwen, J. G. & Cuomo, C. A., Sep 1 2016, In: mSphere. 1, 5, e00213-16.Research output: Contribution to journal › Research Article › peer-review
Open Access91 Scopus citations -
2015
The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia
Muñoz, J. F., Gauthier, G. M., Desjardins, C. A., Gallo, J. E., Holder, J., Sullivan, T. D., Marty, A. J., Carmen, J. C., Chen, Z., Ding, L., Gujja, S., Magrini, V., Misas, E., Mitreva, M., Priest, M., Saif, S., Whiston, E. A., Young, S., Zeng, Q., Goldman, W. E., & 6 others, Jan 1 2015, In: PLoS Genetics. 11, 10, e1005493.Research output: Contribution to journal › Research Article › peer-review
Open Access54 Scopus citations -
2014
Genome Update of the Dimorphic Human Pathogenic Fungi Causing Paracoccidioidomycosis
Muñoz, J. F., Gallo, J. E., Misas, E., Priest, M., Imamovic, A., Young, S., Zeng, Q., Clay, O. K., McEwen, J. G. & Cuomo, C. A., Dec 4 2014, In: PLoS Neglected Tropical Diseases. 8, 12, e3348.Research output: Contribution to journal › Research Article › peer-review
Open Access34 Scopus citations -
Limits to sequencing and de novo assembly: Classic benchmark sequences for optimizing fungal NGS designs
Muñnoz, J. F., Misas, E., Gallo, J. E., McEwen, J. G. & Clay, O. K., Jan 1 2014, Advances in Computational Biology - Proceedings of the 2nd Colombian Congress on Computational Biology and Bioinformatics CCBCOL 2013. Springer, p. 221-230 10 p. (Advances in Intelligent Systems and Computing; vol. 232).Research output: Chapter in Book/Inform › Conference contribution
3 Scopus citations -
The complex task of choosing a de novo assembly: Lessons from fungal genomes
Gallo, J. E., Muñoz, J. F., Misas, E., McEwen, J. G. & Clay, O. K., Dec 2014, In: Computational Biology and Chemistry. 53, PA, p. 97-107 11 p.Research output: Contribution to journal › Research Article › peer-review
5 Scopus citations -
2013
The eukaryotic genome, its reads, and the unfinished assembly
Muñoz, J. F., Gallo, J. E., Misas, E., McEwen, J. G. & Clay, O. K., Jul 11 2013, In: FEBS Letters. 587, 14, p. 2090-2093 4 p.Research output: Contribution to journal › Research Article › peer-review
3 Scopus citations -
2011
GC3 of genes can be used as a proxy for isochore base composition: A reply to Elhaik et al.
Clay, O. K. & Bernardi, G., Jan 1 2011, In: Molecular Biology and Evolution. 28, 1, p. 21-23 3 p.Research output: Contribution to journal › Review article › peer-review
Open Access14 Scopus citations -
2008
GC level and expression of human coding sequences
Arhondakis, S., Clay, O. & Bernardi, G., Mar 14 2008, In: Biochemical and Biophysical Research Communications. 367, 3, p. 542-545 4 p.Research output: Contribution to journal › Research Article › peer-review
20 Scopus citations -
2007
Erratum: Simple proteomic checks for detecting noncoding RNA (Proteomics 7,3 (361-363) DOI: 10.1002/pmic.200600813)
Clay, O., May 2007, In: Proteomics. 7, 9, p. 1560 1 p.Research output: Contribution to journal › Comment/debate › peer-review
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Human chromosomal bands: Nested structure, high-definition map and molecular basis
Costantini, M., Clay, O., Federico, C., Saccone, S., Auletta, F. & Bernardi, G., Feb 2007, In: Chromosoma. 116, 1, p. 29-40 12 p.Research output: Contribution to journal › Research Article › peer-review
33 Scopus citations -
Simple proteomic checks for detecting noncoding RNA
Cruveiller, S., Clay, O., Jabbari, K. & Bernardi, G., Feb 2007, In: Proteomics. 7, 3, p. 361-363 3 p.Research output: Contribution to journal › Research Article › peer-review
6 Scopus citations -
2006
An isochore map of human chromosomes
Costantini, M., Clay, O., Auletta, F. & Bernardi, G., Apr 2006, In: Genome Research. 16, 4, p. 536-541 6 p.Research output: Contribution to journal › Research Article › peer-review
Open Access177 Scopus citations -
Compositional properties of human cDNA libraries: Practical implications
Arhondakis, S., Clay, O. & Bernardi, G., Oct 16 2006, In: FEBS Letters. 580, 24, p. 5772-5778 7 p.Research output: Contribution to journal › Research Article › peer-review
Open Access8 Scopus citations -
Density gradient ultracentrifugation and whole genome sequences: Fine-tuning the correspondence
Clay, O., Carels, N., Douady, C. J. & Bernardi, G., 2006, In: Progress in Colloid and Polymer Science. 131, p. 97-107 11 p.Research output: Contribution to journal › Research Article › peer-review
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2005
How not to search for isochores: A reply to Cohen et al
Clay, O. & Bernardi, G., Dec 2005, In: Molecular Biology and Evolution. 22, 12, p. 2315-2317 3 p.Research output: Contribution to journal › Research Article › peer-review
Open Access15 Scopus citations -
2004
Compositional gene landscapes in vertebrates
Cruveiller, S., Jabbari, K., Clay, O. & Bernardi, G., May 2004, In: Genome Research. 14, 5, p. 886-892 7 p.Research output: Contribution to journal › Research Article › peer-review
Open Access16 Scopus citations -
Inaccurate reconstruction of ancestral GC levels creates a "vanishing isochores" effect
Alvarez-Valin, F., Clay, O., Cruveiller, S. & Bernardi, G., May 2004, In: Molecular Phylogenetics and Evolution. 31, 2, p. 788-793 6 p.Research output: Contribution to journal › Research Article › peer-review
17 Scopus citations -
Incorrectly predicted genes in rice?
Cruveiller, S., Jabbari, K., Clay, O. & Bernardi, G., May 26 2004, In: Gene. 333, SUPPL., p. 187-188 2 p.Research output: Contribution to journal › Research Article › peer-review
12 Scopus citations -
Quantifying intrachromosomal GC heterogeneity in prokaryotic genomes
Bernaola-Galván, P., Oliver, J. L., Carpena, P., Clay, O. & Bernardi, G., May 26 2004, In: Gene. 333, 1-2, p. 121-133 13 p.Research output: Contribution to journal › Research Article › peer-review
23 Scopus citations -
Representing GC variation along eukaryotic chromosomes
Pačes, J., Zíka, R., Pačes, V., Pavlíček, A., Clay, O. & Bernardi, G., May 26 2004, In: Gene. 333, SUPPL., p. 135-141 7 p.Research output: Contribution to journal › Research Article › peer-review
30 Scopus citations -
The new genes of rice: A closer look
Jabbari, K., Cruveiller, S., Clay, O., Le Saux, J. & Bernardi, G., Jun 1 2004, In: Trends in Plant Science. 9, 6, p. 281-285 5 p.Research output: Contribution to journal › Research Article › peer-review
32 Scopus citations -
2003
Compositional features of eukaryotic genomes for checking predicted genes.
Cruveiller, S., Jabbari, K., Clay, O. & Bemardi, G., Mar 2003, In: Briefings in Bioinformatics. 4, 1, p. 43-52 10 p.Research output: Contribution to journal › Review article › peer-review
Open Access15 Scopus citations -
GC3 heterogeneity and body temperature in vertebrates
Jabbari, K., Clay, O. & Bernardi, G., Oct 23 2003, In: Gene. 317, 1-2, p. 161-163 3 p.Research output: Contribution to journal › Research Article › peer-review
8 Scopus citations -
LDH-A and α-actin as tools to assess the effects of temperature on the vertebrate genome: Some problems
Clay, O., Arhondakis, S., D'Onofrio, G. & Bernardi, G., Oct 23 2003, In: Gene. 317, 1-2, p. 157-160 4 p.Research output: Contribution to journal › Research Article › peer-review
4 Scopus citations -
The correlation between GC3 and hydropathy in human genes
Jabbari, K., Cruveiller, S., Clay, O. & Bernardi, G., Oct 23 2003, In: Gene. 317, 1-2, p. 137-140 4 p.Research output: Contribution to journal › Research Article › peer-review
13 Scopus citations -
Using analytical ultracentrifugation to study compositional variation in vertebrate genomes
Clay, O., Douady, C. J., Carels, N., Hughes, S., Bucciarelli, G. & Bernardi, G., Aug 2003, In: European Biophysics Journal. 32, 5, p. 418-426 9 p.Research output: Contribution to journal › Research Article › peer-review
14 Scopus citations -
2002
A compact view of isochores in the draft human genome sequence
Pavlíček, A., Pačes, J., Clay, O. & Bernardi, G., Jan 30 2002, In: FEBS Letters. 511, 1-3, p. 165-169 5 p.Research output: Contribution to journal › Research Article › peer-review
Open Access52 Scopus citations -
Compositional patterns in reptilian genomes
Hughes, S., Clay, O. & Bernardi, G., Aug 7 2002, In: Gene. 295, 2, p. 323-329 7 p.Research output: Contribution to journal › Research Article › peer-review
23 Scopus citations -
Isochore conservation between MHC regions on human chromosome 6 and mouse chromosome 17
Pavlíček, A., Clay, O., Jabbari, K., Pačes, J. & Bernardi, G., Jan 30 2002, In: FEBS Letters. 511, 1-3, p. 175-177 3 p.Research output: Contribution to journal › Letter › peer-review
12 Scopus citations -
Isochores: Dream or reality?
Clay, O. & Bernardi, G., Jun 1 2002, In: Trends in Biotechnology. 20, 6, p. 237 1 p.Research output: Contribution to journal › Letter › peer-review
5 Scopus citations -
Transposable elements encoding functional proteins: Pitfalls in unprocessed genomic data?
Pavlíček, A., Clay, O. & Bernardi, G., Jul 17 2002, In: FEBS Letters. 523, 1-3, p. 252-253 2 p.Research output: Contribution to journal › Letter › peer-review
12 Scopus citations -
2001
Compositional heterogeneity within and among isochores in mammalian genomes: II. Some general comments
Clay, O. & Bernardi, G., Oct 3 2001, In: Gene. 276, 1-2, p. 25-31 7 p.Research output: Contribution to journal › Research Article › peer-review
16 Scopus citations -
Compositional heterogeneity within and among isochores in mammalian genomes: I. CsCl and sequence analyses
Clay, O., Carels, N., Douady, C., Macaya, G. & Bernardi, G., Oct 3 2001, In: Gene. 276, 1-2, p. 15-24 10 p.Research output: Contribution to journal › Research Article › peer-review
26 Scopus citations -
Standard deviations and correlations of GC levels in DNA sequences
Clay, O., Oct 3 2001, In: Gene. 276, 1-2, p. 33-38 6 p.Research output: Contribution to journal › Research Article › peer-review
23 Scopus citations -
The isochores in human chromosomes 21 and 22
Clay, O. & Bernardi, G., 2001, In: Biochemical and Biophysical Research Communications. 285, 4, p. 855-856 2 p.Research output: Contribution to journal › Short survey › peer-review
12 Scopus citations -
2000
Diversity and phylogenetic implications of CsCl profiles from rodent DNAs
Douady, C., Carels, N., Clay, O., Catzeflis, F. & Bernardi, G., 2000, In: Molecular Phylogenetics and Evolution. 17, 2, p. 219-230 12 p.Research output: Contribution to journal › Research Article › peer-review
17 Scopus citations -
1999
Proto-oncogenes, unlike 'harmless' genes, tend to be dispersed in the human genome: Selection against out-of-register recombination?
Ahmed, S., Clay, O. K. & Schaffner, W., 1999, In: Biological Chemistry. 380, 1, p. 3-5 3 p.Research output: Contribution to journal › Editorial › peer-review
2 Scopus citations -
1997
Long non-stop reading frames on the antisense strand of heat shock protein 70 genes and prion protein (PrP) genes are conserved between species
Rother, K. I., Clay, O. K., Bourquin, J. P., Silke, J. & Schaffner, W., Dec 1997, In: Biological Chemistry. 378, 12, p. 1521-1530 10 p.Research output: Contribution to journal › Research Article › peer-review
18 Scopus citations -
1996
Human coding and noncoding DNA: Compositional correlations
Clay, O., Cacciò, S., Zoubak, S., Mouchiroud, D. & Bernardi, G., Feb 1996, In: Molecular Phylogenetics and Evolution. 5, 1, p. 2-12 11 p.Research output: Contribution to journal › Research Article › peer-review
94 Scopus citations -
The gene distribution of the human genome
Zoubak, S., Clay, O. & Bernardi, G., Sep 26 1996, In: Gene. 174, 1, p. 95-102 8 p.Research output: Contribution to journal › Research Article › peer-review
160 Scopus citations